SNP Profiles of AMAZ 3/2   View Data

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 1234567891011121314
_Input profile
CCAGCCTTTTAATTGTCCCCAAAGCCAG
1._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
2._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
3._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
4._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
5._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
6._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._GC-03-022-2-11
CC_CCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2
CC_CCTTTTAATTTTCTCCAAGGCCAA
12._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
14._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
15._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
16._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
17._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
19._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
20._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
21._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
22._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
23._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
24._GC-03-022-2-11
CCAACCTT_AATTTTCTCCAAGGCCAA
25._GC-03-022-2-11
CCAACCTTTT_TTTTCTCCAAGGCCAA
26._AMAZ_3_/2
CCAACCTTTT_TTTTCTCCAAGGCCAA
27._AMAZ_3_/2
CCAACCTT_AATTTTCTCCAAGGCCAA
28._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
29._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
30._RUQ_91
__CC____TT_CC_GG_AA
31._RUQ_91
_AACC-___TT____CCAA
32._RUQ_91
GGAAGGAAAAAAAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
CTAACGCCCTGGGGCTACGGGGCTCCAG
1._AMAZ_3_/2
CTAACGCCCTGGGGCTACGGGGCTCCAG
2._GC-03-022-2-11
CTAACGCCCTGGGGCTACGGGGCTCCAG
3._GC-03-022-2-11
CTAACGCCCTGGGGCTACGGGGCTCCAG
4._GC-03-022-2-11
CTAACGCCCTGGGGCTACGGGGCTCCAG
5._GC-03-022-2-11
CTAACGCCCTGGGGCTACGGGGCTCCAG
6._AMAZ_3_/2
CTAACGCCCTGGGGCTACGGGGCTCCAG
7._AMAZ_3_/2
CTAACGCCCTGGGGCTACGGGGCTCCAG
8._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
9._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
10._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
11._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
12._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
13._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
14._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
15._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
16._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
17._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
18._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
19._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
20._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
21._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
22._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
23._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
24._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
25._GC-03-022-2-11
CTATGGCTCCCGGTCCAA_GGCCCCAA
26._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
27._AMAZ_3_/2
CTATGGCTCCCGGTCCAA_GGCCCCAA
28._RUQ_91
CTATGGCTCCCGGTCCAACCGGCCCCAA
29._AMAZ_3_/2
CTATGGCTCCCGGTCCAACCGGCCCCAA
30._RUQ_91
_____CGGT_AA___CC_
31._RUQ_91
____CC-GTCCAACC-CCCC-
32._RUQ_91
AGATGGAGGGCGACGGAACCCC_CC_
 2930313233343536373839   
_Input profile
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
1._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
2._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
3._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
4._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
5._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
6._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
7._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
8._GC-03-022-2-11
GGATTTAAGGAA_GTAAATGGX_XX_XX_X
9._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
10._AMAZ_3_/2
GGATTTAAGGAA_GTAAATGGX_XX_XX_X
11._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
12._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
13._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
14._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
15._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
16._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
17._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
18._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
19._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
20._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
21._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
22._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
23._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
24._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
25._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
26._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
27._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
28._RUQ_91
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
29._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
30._RUQ_91
___AA____AA__X_XX_XX_X
31._RUQ_91
_AT-AAGGAACCGTAA__X_XX_XX_X
32._RUQ_91
GGATAAAACCAAGGACAAATGGX_XX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

2._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

8._AMAZ_3_/2 GC-03-022-2-11

67.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

67.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._AMAZ_3_/2

67.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

11._AMAZ_3_/2

67.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

12._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

13._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

19._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

20._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

21._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

22._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

23._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

24._AMAZ_3_/2 GC-03-022-2-11

66.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._AMAZ_3_/2 GC-03-022-2-11

66.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._AMAZ_3_/2

66.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

27._AMAZ_3_/2

66.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

28._AMAZ_3_/2 RUQ_91

65.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._AMAZ_3_/2

65.4 %
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

30._AMAZ_3_/2 RUQ_91

59.1 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._AMAZ_3_/2 RUQ_91

52.6 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._AMAZ_3_/2 RUQ_91

34.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25